Human Dataset

1. Data from public papers

GEO Paper
GSE63525 A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping PMID:25497547
GSE35156 Topological domains in mammalian genomes identified by analysis of chromatin interactions. PMID:22495300
GSE18199 Comprehensive mapping of long-range interactions reveals folding principles of the human genome. PMCID:19815776

2. Public Data Meta Information

Key Data Category Organism Cell Data Type Lab Antibody Peak or signals Replicate number File type
GSE18199_GM06690_1000000_MatrixLieberman-Aiden and van Berkum et al. | Science 2009|GSE18199hg18GM06690Hi-C HeatmapJob DekkerImage
GSE18199_GM06690_100000_MatrixLieberman-Aiden and van Berkum et al. | Science 2009|GSE18199hg18GM06690Hi-C HeatmapJob DekkerImage
GM12878_CTCF_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteCTCF SignalbigWig
GM12878_DNase-seq_signalEncodehg18GM12878DNase-seqCrawford - Duke UniversitySignalbigWig
GM12878_H3K4me1_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K4me1 SignalbigWig
GM12878_H3K4me2_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K4me2 SignalbigWig
GM12878_H3K4me3_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K4me3 SignalbigWig
GM12878_H3K27ac_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K27ac SignalbigWig
GM12878_H3K27me3_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K27me3 SignalbigWig
GM12878_H3K36me3_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K36me3 SignalbigWig
GM12878_H3K9ac_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K9ac SignalbigWig
GM12878_H4K20me1_signalEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH4K20me1 SignalbigWig
GM12878_CTCFEncodehg18GM12878ChIP-seqBernstein - Broad InstituteCTCF PeaksbroadPeak
GM12878_H3K4me1Encodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K4me1 PeaksbroadPeak
GM12878_H3K4me2Encodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K4me2 PeaksbroadPeak
GM12878_H3K4me3Encodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K4me3 PeaksbroadPeak
GM12878_H3K27acEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K27ac PeaksbroadPeak
GM12878_H3K27me3Encodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K27me3 PeaksbroadPeak
GM12878_H3K36me3Encodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K36me3 PeaksbroadPeak
GM12878_H3K9acEncodehg18GM12878ChIP-seqBernstein - Broad InstituteH3K9ac PeaksbroadPeak
GM12878_H4K20me1Encodehg18GM12878ChIP-seqBernstein - Broad InstituteH4K20me1 PeaksbroadPeak
GM12878_DNase-seqEncodehg18GM12878DNase-seqCrawford - Duke UniversityPeaksnarrowPeak
GM12878_RNA-Seq_minus_signalEncodehg19GM12878RNA-SeqGingeras - CSHLMinus signalbigWig
GM12878_RNA-Seq_plus_signalEncodehg19GM12878RNA-SeqGingeras - CSHLPlus signalbigWig
GM12878_EZH2_signalEncodehg19GM12878ChIP-seqBernstein - Broad InstituteEZH2 SignalbigWig
GM12878_H2AZ_signalEncodehg19GM12878ChIP-seqBernstein - Broad InstituteH2AZ SignalbigWig
GM12878_H3K79me2_signalEncodehg19GM12878ChIP-seqBernstein - Broad InstituteH3K79me2 SignalbigWig
GM12878_H3K9me3_signalEncodehg19GM12878ChIP-seqBernstein - Broad InstituteH3K9me3 SignalbigWig
GM12878_RIP-Seq_signalEncodehg19GM12878RIP-SeqSunyAlbanyripInputSignalbigWig
GM12878_EZH2Encodehg19GM12878ChIP-seqBernstein - Broad InstituteEZH2 PeaksbroadPeak
GM12878_H2AZEncodehg19GM12878ChIP-seqBernstein - Broad InstituteH2AZ PeaksbroadPeak
GM12878_H3K79me2Encodehg19GM12878ChIP-seqBernstein - Broad InstituteH3K79me2 PeaksbroadPeak
GM12878_H3K9me3Encodehg19GM12878ChIP-seqBernstein - Broad InstituteH3K9me3 PeaksbroadPeak
GM12878_Elavl1Encodehg19GM12878RIP-SeqSunyAlbanyELAVL1 PeaksbroadPeak
GM12878_Pabpc1Encodehg19GM12878RIP-SeqSunyAlbanyPABPC1 PeaksbroadPeak
GM12878_RIP-seqEncodehg19GM12878RIP-SeqSunyAlbanyripInputPeaksbroadPeak
GM12878_5CEncodehg19GM12878Dekker - UMassPeaksbed
GSE63525_GM12878_combined_1000000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19GM12878Hi-C HeatmapErez Lieberman AidenImage
GSE63525_GM12878_combined_InteractionRao and Huntley et al. | Cell 2014| GSE63525hg19GM12878Hi-C InteractionsErez Lieberman AidenGFF3
GSE63525_GM12878_combined_TADRao and Huntley et al. | Cell 2014| GSE63525hg19GM12878Hi-C TADErez Lieberman AidenGFF3
GSE63525_GM12878_combined_500000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19GM12878Hi-C HeatmapErez Lieberman AidenImage
GSE63525_GM12878_combined_250000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19GM12878Hi-C HeatmapErez Lieberman AidenImage
GSE63525_GM12878_combined_100000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19GM12878Hi-C HeatmapErez Lieberman AidenImage
H1-hESC_DNase-seq_signalEncodehg18H1-hESCDNase-seqCrawford - Duke UniversitySignalbigWig
H1-hESC_CTCF_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteCTCF SignalbigWig
H1-hESC_H3K27me3_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K27me3 SignalbigWig
H1-hESC_H3K36me3_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K36me3 SignalbigWig
H1-hESC_H3K4me1_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K4me1 SignalbigWig
H1-hESC_H3K4me2_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K4me2 SignalbigWig
H1-hESC_H3K4me3_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K4me3 SignalbigWig
H1-hESC_H3K9ac_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K9ac SignalbigWig
H1-hESC_H4K20me1_signalEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH4K20me1 SignalbigWig
H1-hESC_CTCFEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteCTCF PeaksbigWig
H1-hESC_H3K27me3Encodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K27me3 PeaksbroadPeak
H1-hESC_H3K36me3Encodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K36me3 PeaksbroadPeak
H1-hESC_H3K4me1Encodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K4me1 PeaksbroadPeak
H1-hESC_H3K4me2Encodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K4me2 PeaksbroadPeak
H1-hESC_H3K4me3Encodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K4me3 PeaksbroadPeak
H1-hESC_H3K9acEncodehg18H1-hESCChIP-seqBernstein - Broad InstituteH3K9ac PeaksbroadPeak
H1-hESC_H4K20me1Encodehg18H1-hESCChIP-seqBernstein - Broad InstituteH4K20me1 PeaksbroadPeak
H1-hESC_RNA-Seq_minus_signalEncodehg19H1-hESCRNA-SeqGingeras - CSHLMinus signal2bigWig
H1-hESC_RNA-Seq_plus_signalEncodehg19H1-hESCRNA-SeqGingeras - CSHLPlus signal2bigWig
H1-hESC_EZH2_signalEncodehg19H1-hESCChIP-seqBernstein - Broad InstituteEZH2 SignalbigWig
H1-hESC_H2AZ_signalEncodehg19H1-hESCChIP-seqBernstein - Broad InstituteH2AZ SignalbigWig
H1-hESC_H3K9me3_signalEncodehg19H1-hESCChIP-seqBernstein - Broad InstituteH3K9me3 SignalbigWig
H1-hESC_H3K27ac_signalEncodehg19H1-hESCChIP-seqBernstein - Broad InstituteH3K27ac SignalbigWig
H1-hESC_H3K79me2_signalEncodehg19H1-hESCChIP-seqBernstein - Broad InstituteH3K79me2 SignalbigWig
H1-hESC_RAD21_signalEncodehg19H1-hESCChIP-seqSnyder - StanfordSignalbigWig
H1-hESC_ZNF143_signalEncodehg19H1-hESCChIP-seqSnyder - StanfordSignalbigWig
H1-hESC_EZH2Encodehg19H1-hESCChIP-seqBernstein - Broad InstituteEZH2 PeaksbroadPeak
H1-hESC_H2AZEncodehg19H1-hESCChIP-seqBernstein - Broad InstituteH2AZ PeaksbroadPeak
H1-hESC_H3K9me3Encodehg19H1-hESCChIP-seqBernstein - Broad InstituteH3K9me3 PeaksbroadPeak
H1-hESC_H3K27acEncodehg19H1-hESCChIP-seqBernstein - Broad InstituteH3K27ac PeaksbroadPeak
H1-hESC_H3K79me2Encodehg19H1-hESCChIP-seqBernstein - Broad InstituteH3K79me2 PeaksbroadPeak
H1-hESC_RAD21Encodehg19H1-hESCChIP-seqSnyder - StanfordPeaksnarrowPeak
H1-hESC_ZNF143Encodehg19H1-hESCChIP-seqSnyder - StanfordPeaksnarrowPeak
H1-hESC_5CEncodehg19H1-hESCPeaksbed
HeLa-S3_DNase-seq_signalEncodehg18HeLa-S3DNase-seqCrawford - Duke UniversitySignalbigWig
HeLa-S3_ChIA-PET_Pol2_signalEncodehg19HeLa-S3ChIA-PETGIS-RuanPOL2 SignalbigWig
HeLa-S3_CTCF_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteCTCF SignalbigWig
HeLa-S3_H2AZ_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH2AZ SignalbigWig
HeLa-S3_EZH2_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteEZH2 SignalbigWig
HeLa-S3_H3K4me1_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K4me1 SignalbigWig
HeLa-S3_H3K9me3_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K9me3 SignalbigWig
HeLa-S3_H3K27ac_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K27ac SignalbigWig
HeLa-S3_H3K27me3_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K27me3 SignalbigWig
HeLa-S3_H3K36me3_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K36me3 SignalbigWig
HeLa-S3_H3K4me2_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K4me2 SignalbigWig
HeLa-S3_H3K4me3_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K4me3 SignalbigWig
HeLa-S3_H3K79me2_signal Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K79me2 SignalbigWig
HeLa-S3_H3K9ac_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K9ac SignalbigWig
HeLa-S3_H4K20me1_signalEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH4K20me1 SignalbigWig
HeLa-S3_CTCFEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteCTCF PeaksbroadPeak
HeLa-S3_EZH2Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteEZH2 PeaksbroadPeak
HeLa-S3_H2AZEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH2AZ PeaksbroadPeak
HeLa-S3_H3K4me1Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K4me1 PeaksbroadPeak
HeLa-S3_H3K9me3Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K9me3 PeaksbroadPeak
HeLa-S3_H3K27acEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K27ac PeaksbroadPeak
HeLa-S3_H3K27me3Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K27me3 PeaksbroadPeak
HeLa-S3_H3K36me3Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K36me3 PeaksbroadPeak
HeLa-S3_H3K4me2Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K4me2 PeaksbroadPeak
HeLa-S3_H3K4me3Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K4me3 PeaksbroadPeak
HeLa-S3_H3K79me2 Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K79me2 PeaksbroadPeak
HeLa-S3_H3K9acEncodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH3K9ac PeaksbroadPeak
HeLa-S3_H4K20me1Encodehg19HeLa-S3ChIP-seqBernstein - Broad InstituteH4K20me1 PeaksbroadPeak
HeLa-S3_ChIA-PET_Pol2EncodeHeLa-S3ChIA-PETGIS-RuanPOL2 Interactionsbed
HepG2_DNase-seq_signalEncodehg18HepG2DNase-seqCrawford - Duke UniversitySignalbigWig
HepG2_CTCF_signalEncodehg18HepG2ChIP-seqBernstein - Broad InstituteCTCF SignalbigWig
HepG2_H3K27ac_signalEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K27ac SignalbigWig
HepG2_H3K27me3_signalEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K27me3 SignalbigWig
HepG2_H3K4me2_signalEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K4me2 SignalbigWig
HepG2_H3K4me3_signalEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K4me3 SignalbigWig
HepG2_H3K9ac_signalEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K9ac SignalbigWig
HepG2_H4K20me1_signalEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH4K20me1 SignalbigWig
HepG2_CTCFEncodehg18HepG2ChIP-seqBernstein - Broad InstituteCTCF PeaksbroadPeak
HepG2_H3K27acEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K27ac PeaksbroadPeak
HepG2_H3K27me3Encodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K27me3 PeaksbroadPeak
HepG2_H3K36me3Encodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K36me3 PeaksbroadPeak
HepG2_H3K4me2Encodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K4me2 PeaksbroadPeak
HepG2_H3K4me3Encodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K4me3 PeaksbroadPeak
HepG2_H3K9acEncodehg18HepG2ChIP-seqBernstein - Broad InstituteH3K9ac PeaksbroadPeak
HepG2_H4K20me1Encodehg18HepG2ChIP-seqBernstein - Broad InstituteH4K20me1 PeaksbroadPeak
HepG2_RNA-Seq_minus_signalEncodehg19HepG2RNA-SeqWold - CalTechMinus Raw signalbigWig
HepG2_RNA-Seq_plus_signalEncodehg19HepG2RNA-SeqWold - CalTechPlus Raw signalbigWig
HepG2_EZH2_signalEncodehg19HepG2ChIP-seqBernstein - Broad InstituteEZH2 SignalbigWig
HepG2_H2AZ_signalEncodehg19HepG2ChIP-seqBernstein - Broad InstituteH2AZ SignalbigWig
HepG2_H3K4me1_signalEncodehg19HepG2ChIP-seqBernstein - Broad InstituteH3K4me1 SignalbigWig
HepG2_H3K9me3_signalEncodehg19HepG2ChIP-seqBernstein - Broad InstituteH3K9me3 SignalbigWig
HepG2_H3K79me2_signalEncodehg19HepG2ChIP-seqBernstein - Broad InstituteH3K79me2 SignalbigWig
HepG2_RAD21_signalEncodehg19HepG2ChIP-seqSnyder - StanfordRAD21 SignalbigWig
HepG2_SMC3_signalEncodehg19HepG2ChIP-seqSnyder - StanfordSMC3 SignalbigWig
HepG2_EZH2Encodehg19HepG2ChIP-seqBernstein - Broad InstituteEZH2 PeaksbroadPeak
HepG2_H2AZEncodehg19HepG2ChIP-seqBernstein - Broad InstituteH2AZ PeaksbroadPeak
HepG2_H3K4me1Encodehg19HepG2ChIP-seqBernstein - Broad InstituteH3K4me1 PeaksbroadPeak
HepG2_H3K9me3Encodehg19HepG2ChIP-seqBernstein - Broad InstituteH3K9me3 PeaksbroadPeak
HepG2_H3K79me2Encodehg19HepG2ChIP-seqBernstein - Broad InstituteH3K79me2 PeaksbroadPeak
HepG2_RAD21Encodehg19HepG2ChIP-seqSnyder - StanfordRAD21 PeaksnarrowPeak
HepG2_SMC3Encodehg19HepG2ChIP-seqSnyder - StanfordSMC3 PeaksnarrowPeak
GSE63525_HMEC_combined_1000000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HMECHi-C HeatmapErez Lieberman AidenImage
GSE63525_HMEC_combined_InteractionRao and Huntley et al. | Cell 2014| GSE63525hg19HMECHi-C InteractionsErez Lieberman AidenGFF3
GSE63525_HMEC_combined_TADRao and Huntley et al. | Cell 2014| GSE63525hg19HMECHi-C TADErez Lieberman AidenGFF3
GSE63525_HMEC_combined_500000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HMECHi-C HeatmapErez Lieberman AidenImage
GSE63525_HMEC_combined_250000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HMECHi-C HeatmapErez Lieberman AidenImage
GSE63525_HMEC_combined_100000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HMECHi-C HeatmapErez Lieberman AidenImage
HUVEC_CTCF_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteCTCF SignalbigWig
HUVEC_H3K27ac_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K27ac SignalbigWig
HUVEC_H3K27me3_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K27me3 SignalbigWig
HUVEC_H3K36me3_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K36me3 SignalbigWig
HUVEC_H3K4me1_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K4me1 SignalbigWig
HUVEC_H3K4me2_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K4me2 SignalbigWig
HUVEC_H3K4me3_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K4me3 SignalbigWig
HUVEC_H3K9ac_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K9ac SignalbigWig
HUVEC_H3K9me1_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K9me1 SignalbigWig
HUVEC_H4K20me1_signalEncodehg18HUVECChIP-seqBernstein - Broad InstituteH4K20me1 SignalbigWig
HUVEC_CTCFEncodehg18HUVECChIP-seqBernstein - Broad InstituteCTCF PeaksbroadPeak
HUVEC_H3K27acEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K27ac PeaksbroadPeak
HUVEC_H3K27me3Encodehg18HUVECChIP-seqBernstein - Broad InstituteH3K27me3 PeaksbroadPeak
HUVEC_H3K36me3Encodehg18HUVECChIP-seqBernstein - Broad InstituteH3K36me3 PeaksbroadPeak
HUVEC_H3K4me1Encodehg18HUVECChIP-seqBernstein - Broad InstituteH3K4me1 PeaksbroadPeak
HUVEC_H3K4me2Encodehg18HUVECChIP-seqBernstein - Broad InstituteH3K4me2 PeaksbroadPeak
HUVEC_H3K4me3Encodehg18HUVECChIP-seqBernstein - Broad InstituteH3K4me3 PeaksbroadPeak
HUVEC_H3K9acEncodehg18HUVECChIP-seqBernstein - Broad InstituteH3K9ac PeaksbroadPeak
HUVEC_H3K9me1Encodehg18HUVECChIP-seqBernstein - Broad InstituteH3K9me1 PeaksbroadPeak
HUVEC_H4K20me1Encodehg18HUVECChIP-seqBernstein - Broad InstituteH4K20me1 PeaksbroadPeak
HUVEC_DNase-seq_signalEncodehg19HUVECDNase-seqUWRaw signalbigWig
HUVEC_RNA-Seq_minus_signalEncodehg19HUVECRNA-SeqGingeras - CSHLMinus signal3bigWig
HUVEC_RNA-Seq_plus_signalEncodehg19HUVECRNA-SeqGingeras - CSHLPlus signal3bigWig
HUVEC_EZH2_signalEncodehg19HUVECChIP-seqBernstein - Broad InstituteEZH2 SignalbigWig
HUVEC_H2AZ_signalEncodehg19HUVECChIP-seqBernstein - Broad InstituteH2AZ SignalbigWig
HUVEC_H3K9me3_signalEncodehg19HUVECChIP-seqBernstein - Broad InstituteH3K9me3 SignalbigWig
HUVEC_H3K79me2_signalEncodehg19HUVECChIP-seqBernstein - Broad InstituteH3K79me2 SignalbigWig
HUVEC_EZH2Encodehg19HUVECChIP-seqBernstein - Broad InstituteEZH2 PeaksbroadPeak
HUVEC_H2AZEncodehg19HUVECChIP-seqBernstein - Broad InstituteH2AZ PeaksbroadPeak
HUVEC_H3K9me3Encodehg19HUVECChIP-seqBernstein - Broad InstituteH3K9me3 PeaksbroadPeak
HUVEC_H3K79me2Encodehg19HUVECChIP-seqBernstein - Broad InstituteH3K79me2 PeaksbroadPeak
GSE63525_HUVEC_combined_1000000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HUVECHi-C HeatmapErez Lieberman AidenImage
GSE63525_HUVEC_combined_InteractionRao and Huntley et al. | Cell 2014| GSE63525hg19HUVECHi-C InteractionsErez Lieberman AidenGFF3
GSE63525_HUVEC_combined_TADRao and Huntley et al. | Cell 2014| GSE63525hg19HUVECHi-C TADErez Lieberman AidenGFF3
GSE63525_HUVEC_combined_500000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HUVECHi-C HeatmapErez Lieberman AidenImage
GSE63525_HUVEC_combined_250000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HUVECHi-C HeatmapErez Lieberman AidenImage
GSE63525_HUVEC_combined_100000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19HUVECHi-C HeatmapErez Lieberman AidenImage
GSE35156_IMR90_40000_MatrixDixon et al. |Nature 2012|GSE35156hg18IMR90Hi-C HeatmapBing RenImage
GSE35156_IMR90_40000_TADDixon et al. |Nature 2012|GSE35156hg18IMR90Hi-C TADBing RenGFF3
IMR90_DNase-seq_signalEncodehg19IMR90DNase-seqDukeSignalbigWig
IMR90_RNA-Seq_minus_signalEncodehg19IMR90RNA-SeqGingeras - CSHLSignalbigWig
IMR90_RNA-Seq_plus_signalEncodehg19IMR90RNA-SeqGingeras - CSHLSignalbigWig
IMR90_CTCF_signalEncodehg19IMR90ChIP-seqStanfordCTCF SignalbigWig
IMR90_RAD21_signalEncodehg19IMR90ChIP-seqStanfordRAD21 SignalbigWig
IMR90_DNase-seqEncodehg19IMR90DNase-seqDukePeaksnarrowPeak
IMR90_CTCFEncodehg19IMR90ChIP-seqStanfordCTCF PeaksnarrowPeak
IMR90_RAD21Encodehg19IMR90ChIP-seqStanfordRAD21 PeaksnarrowPeak
GSE63525_IMR90_combined_1000000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19IMR90Hi-C HeatmapErez Lieberman AidenImage
GSE63525_IMR90_combined_InteractionRao and Huntley et al. | Cell 2014| GSE63525hg19IMR90Hi-C InteractionsErez Lieberman AidenGFF3
GSE63525_IMR90_combined_TADRao and Huntley et al. | Cell 2014| GSE63525hg19IMR90Hi-C TADErez Lieberman AidenGFF3
GSE63525_IMR90_combined_500000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19IMR90Hi-C HeatmapErez Lieberman AidenImage
GSE63525_IMR90_combined_250000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19IMR90Hi-C HeatmapErez Lieberman AidenImage
GSE63525_IMR90_combined_100000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19IMR90Hi-C HeatmapErez Lieberman AidenImage
K562_CTCF_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteCTCF SignalbigWig
K562_H3K27ac_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K27ac SignalbigWig
K562_H3K27me3_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K27me3 SignalbigWig
K562_H3K36me3_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K36me3 SignalbigWig
K562_H3K4me3_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K4me3 SignalbigWig
K562_H3K9ac_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K9ac SignalbigWig
K562_H3K9me1_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K9me1 SignalbigWig
K562_H4K20me1_signalEncodehg18K562ChIP-seqBernstein - Broad InstituteH4K20me1 SignalbigWig
K562_CTCFEncodehg18K562ChIP-seqBernstein - Broad InstituteCTCF PeaksbroadPeak
K562_H3K27acEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K27ac PeaksbroadPeak
K562_H3K27me3Encodehg18K562ChIP-seqBernstein - Broad InstituteH3K27me3 PeaksbroadPeak
K562_H3K36me3Encodehg18K562ChIP-seqBernstein - Broad InstituteH3K36me3 PeaksbroadPeak
K562_H3K4me1Encodehg18K562ChIP-seqBernstein - Broad InstituteH3K4me1 PeaksbroadPeak
K562_H3K4me2Encodehg18K562ChIP-seqBernstein - Broad InstituteH3K4me2 PeaksbroadPeak
K562_H3K4me3Encodehg18K562ChIP-seqBernstein - Broad InstituteH3K4me3 PeaksbroadPeak
K562_H3K9acEncodehg18K562ChIP-seqBernstein - Broad InstituteH3K9ac PeaksbroadPeak
K562_H3K9me1Encodehg18K562ChIP-seqBernstein - Broad InstituteH3K9me1 PeaksbroadPeak
K562_H4K20me1Encodehg18K562ChIP-seqBernstein - Broad InstituteH4K20me1 PeaksbroadPeak
GSE18199_K562_100000_MatrixLieberman-Aiden and van Berkum et al. | Science 2009|GSE18199hg18K562Hi-C HeatmapJob DekkerImage
GSE18199_K562_1000000_MatrixLieberman-Aiden and van Berkum et al. | Science 2009|GSE18199hg18K562Hi-C HeatmapJob DekkerImage
K562_DNase-seq_signalEncodehg19K562DNase-seqCrawford - Duke UniversitySignalbigWig
K562_RNA-Seq_minus_signalEncodehg19K562RNA-SeqGingeras - CSHLMinus signal4bigWig
K562_RNA-Seq_plus_signalEncodehg19K562RNA-SeqGingeras - CSHLPlus signal4bigWig
K562_ChIA-PET_CTCF_signalEncodehg19K562ChIA-PETGIS-RuanCTCF Signal1bigWig
K562_ChIA-PET_Pol2_signalEncodehg19K562ChIA-PETGIS-RuanPOL2 Signal1bigWig
K562_RIP-Seq_signalEncodehg19K562RIP-SeqSunyAlbanySignal1bigWig
K562_EZH2_signalEncodehg19K562ChIP-seqBernstein - Broad InstituteEZH2 SignalbigWig
K562_H2AZ_signalEncodehg19K562ChIP-seqBernstein - Broad InstituteH2AZ SignalbigWig
K562_H3K79me2_signalEncodehg19K562ChIP-seqBernstein - Broad InstituteH3K79me2 SignalbigWig
K562_H3K9me3_signalEncodehg19K562ChIP-seqBernstein - Broad InstituteH3K9me3 SignalbigWig
K562_RAD21_signalEncodehg19K562ChIP-seqSnyder - StanfordRAD21 Signal1bigWig
K562_EZH2Encodehg19K562ChIP-seqBernstein - Broad InstituteEZH2 PeaksbroadPeak
K562_H2AZEncodehg19K562ChIP-seqBernstein - Broad InstituteH2AZ PeaksbroadPeak
K562_H3K79me2Encodehg19K562ChIP-seqBernstein - Broad InstituteH3K79me2 PeaksbroadPeak
K562_H3K9me3Encodehg19K562ChIP-seqBernstein - Broad InstituteH3K9me3 PeaksbroadPeak
K562_RAD21Encodehg19K562ChIP-seqMyers - Hudson AlphaRAD21 Peaks2broadPeak
K562_DNase-seqEncodehg19K562ChIP-seqCrawford - Duke UniversityPeaksnarrowPeak
K562_RIP-SeqEncodehg19K562RIP-SeqSunyAlbanyPeaksbroadPeak
K562_5CEncodehg19K562Dekker - UMassPeaksbed
GSE63525_K562_combined_1000000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19K562Hi-C HeatmapErez Lieberman AidenImage
GSE63525_K562_combined_InteractionRao and Huntley et al. | Cell 2014| GSE63525hg19K562Hi-C InteractionsErez Lieberman AidenGFF3
GSE63525_K562_combined_TADRao and Huntley et al. | Cell 2014| GSE63525hg19K562Hi-C TADErez Lieberman AidenGFF3
GSE63525_K562_combined_500000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19K562Hi-C HeatmapErez Lieberman AidenImage
GSE63525_K562_combined_250000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19K562Hi-C HeatmapErez Lieberman AidenImage
GSE63525_K562_combined_100000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19K562Hi-C HeatmapErez Lieberman AidenImage
K562_SMC3EncodeK562ChIP-seqBernstein - Broad InstituteSMC3 PeaksnarrowPeak
K562_ZNF143EncodeK562ChIP-seqBernstein - Broad InstituteZNF143 PeaksnarrowPeak
K562_ChIA-PET_CTCFEncodeK562ChIA-PETGIS-RuanCTCF Interactions1bed
K562_ChIA-PET_Pol2EncodeK562ChIA-PETGIS-RuanPOL2 Interactions1bed
GSE63525_KBM7_combined_1000000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19KBM7Hi-C HeatmapErez Lieberman AidenImage
GSE63525_KBM7_combined_InteractionRao and Huntley et al. | Cell 2014| GSE63525hg19KBM7Hi-C InteractionsErez Lieberman AidenGFF3
GSE63525_KBM7_combined_TADRao and Huntley et al. | Cell 2014| GSE63525hg19KBM7Hi-C TADErez Lieberman AidenGFF3
GSE63525_KBM7_combined_500000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19KBM7Hi-C HeatmapErez Lieberman AidenImage
GSE63525_KBM7_combined_250000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19KBM7Hi-C HeatmapErez Lieberman AidenImage
GSE63525_KBM7_combined_100000_MatrixRao and Huntley et al. | Cell 2014| GSE63525hg19KBM7Hi-C HeatmapErez Lieberman AidenImage
ensembl_geneEnsemblhg18GFF3
ensembl_geneEnsemblhg19GFF3

3. Data from other public resources

Data Type Source Version
GeneEnsemblensembl v54, ensembl v75
TranscriptEnsemblensembl v54, ensembl v75